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Table 1 Genes annotated for developmental processes, reproduction and/or embryo development between female, male and hermaphrodite flower buds (size 1 to 6 mm)

From:Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya

Gene ID Description LogCPM Male vs. Female Male vs. Hermaphrodite Hermaphrodite vs. Female
FC* FDR* FC* FDR* FC* FDR*
evm.model.supercontig_2.119 PHD Finger MALE STERILITY 1 5.87 2835.03 2.99E-02 294.20 1.01E-01 9.64 9.69E-01
evm.model.supercontig_157.32 Glucan endo-1,3-beta-glucosidase-like 5.20 30.13 4.50E-02 19.58 1.69E-01 1.54 9.79E-01
evm.model.supercontig_87.13 PHD Finger MALE MEIOCYTE DEATH 1 0.11 21.62 2.82E-02 1.32 1.00E+ 00 16.44 6.83E-02
evm.model.supercontig_85.48 Probable kinase 1.80 9.14 1.72E-02 1.92 1.00E+ 00 4.77 1.68E-01
evm.model.supercontig_50.85 Glycerol-3-phosphate acyltransferase 1 5.70 6.16 4.05E-02 4.31 2.07E-01 1.43 8.91E-01
evm.model.supercontig_1525.1 Abscisic acid 8-hydroxylase 1 5.22 5.32 1.34E-04 3.72 2.57E-03 1.43 3.48 e-01
evm.model.supercontig_6.104 Steroid 22-alpha-hydroxylase/ cytochrome P450 90B1-like 3.97 4.73 2.98E-04 1.24 1.00E+ 00 3.81 3.18E-03
evm.model.supercontig_75.17 E3 ubiquitin-protein ligase XBAT32/33 4.14 3.49 1.02E-03 2.23 1.49E-01 1.56 5.40E-01
evm.model.supercontig_26.241 Cytochrome P450 83B1 (CYP83B1) 4.92 2.54 2.93E-02 1.12 1.00E+ 00 2.26 6.18E-02
evm.model.supercontig_427.3 Protein of unknown function (DUF642) 6.77 2.40 1.64E-04 −1.41 3.79E-01 3.38 2.66E-05
evm.model.supercontig_27.166 G-type lectin S-receptor-like serine threonine-kinase RKS1 4.48 2.09 4.30E-02 1.72 4.07E-01 1.21 8.95E-01
evm.model.supercontig_6.12 Pentatricopeptide repeat-containing protein chloroplastic 5.38 2.02 3.09E-03 1.57 1.58E-01 1.29 5.27E-01
evm.model.supercontig_26.316 Floral homeotic protein PISTILLATA 6.99 1.83 4.97E-03 −1.17 1.00E+ 00 2.14 1.44E-03
evm.model.supercontig_16.181 Condensin-2 complex subunit D3 (NCAPD3) 4.54 1.44 5.41E-01 −1.76 3.23E-01 2.53 5.09E-03
evm.model.supercontig_44.60 Transcription factor MYB4-like 1.68 1.16 9.91E-01 8.43 6.06E-02 −7.25 4.32E-02
evm.model.supercontig_59.35 Ammonium transporter 1 member 2 7.05 −1.42 1.95E-01 1.45 3.10E-01 −2.06 7.87E-04
evm.model.supercontig_13.86 Tetraspanin-11 related 2.43 −1.95 6.84E-01 −7.74 1.92E-02 3.96 1.02E-01
evm.model.supercontig_12.194 Scarecrow-like transcription factor PAT1 7.00 −2.09 2.49E-04 −1.62 8.51E-02 −1.29 4.66E-01
evm.model.supercontig_70.45 Potassium transporter 4 7.87 −2.10 2.55E-03 −1.21 1.00E+ 00 −1.73 1.72E-02
evm.model.supercontig_33.178 Calmodulin 9.88 −2.12 7.14E-04 −1.97 5.38E-03 −1.07 9.75E-01
evm.model.supercontig_8.181 Sterol 3-beta-glucosyltransferase UGT80A2 7.17 −2.14 6.60E-04 −1.50 2.37E-01 −1.43 1.93E-01
evm.model.supercontig_18.43 bZIP transcription factor 53 6.73 −2.15 1.32E-04 −1.54 1.42E-01 −1.40 2.19 e-01
evm.model.supercontig_27.172 G-type lectin S-receptor-like serine threonine- kinase B120 4.56 −2.20 1.84E-02 −1.21 1.00E+ 00 − 1.82 1.27E-01
evm.model.supercontig_52.111 VAN3-binding/Auxin canalisation (Auxin canalis) 5.61 −2.22 5.19E-04 −1.64 6.37E-02 −1.35 2.98E-01
evm.model.supercontig_132.29 E3 ubiquitin- ligase COP1-like/ Protein suppressor of PHYA-105 1 4.30 −2.22 3.88E-02 1.09 1.00E+ 00 −2.43 2.14E-02
evm.model.supercontig_6.349 Thioredoxin reductase 2-like 5.96 −2.50 8.72E-05 −1.67 3.59E-02 −1.50 7.78E-02
evm.model.supercontig_18.81 Transcription factor UPBEAT1 2.86 −3.24 1.12E-01 −5.37 2.85E-02 1.66 7.36 e-01
evm.model.supercontig_25.116 AP2-like ethylene-responsive transcription factor AIL1 2.96 −3.71 4.92E-02 −1.19 1.00E+ 00 − 3.11 1.24E-01
evm.model.supercontig_160.4 Receptor kinase HAIKU2 9.55 −3.71 9.38E-04 −1.95 1.01E-01 −1.90 5.32E-02
evm.model.supercontig_49.19 Abscisic acid 8 -hydroxylase 4 3.51 −4.53 5.74E-03 −6.17 7.33E-03 1.36 8.60E-01
evm.model.supercontig_444.5 Beta-glucosidase 27-like 1.15 −10.02 2.50E-02 −5.43 3.00E-01 −1.85 8.20E-01
evm.model.supercontig_189.36 Beta-glucosidase 32-like 2.34 −17.19 7.54E-03 −3.89 3.65E-01 −4.42 1.15E-01
evm.model.supercontig_1.155 Cytochrome P450 85A-like/ Brassinosteroid-6-oxidase 2 (CYP85A2, BR6OX2) −0.77 −60.77 3.13 e-02 −8.79 7.56E-01 −6.91 2.89E-01
  1. aDifferentially expressed genes parameters: Fold-Change (FC) > 2 or < − 2 and a False Discovery Rate (FDR) < 0.05