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Table 2 Contig classification for cDNA libraries ofPhytophthora cinnamomiinfected avocado roots.

From:EST sequencing and gene expression profiling of defence-related genes fromPersea americanainfected withPhytophthora cinnamomi

Uninfected Library 1 Library 2 Total
Unidentified 5 16 24 45
Hypothetical protein 23 54 75 152
Genes identified 15 69 89 173
  1. Contigs were classed as unidentified, identified or hypothetically identified if the sequence homology search revealed that there was no similarity, significant similarity or inferred structural function respectively. The total number of genes identified was 173 with only 45 of the total 370 contigs generating no identification using the non-redundant (NR) database on the NCBI.
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BMC Plant Biology

ISSN: 1471 - 2229

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