BMC Plant Biology

Table 7 Haplotypes ofGAIin 'Herbie' and their number inferred using PHASE 2

From:Association study between the gibberellic acid insensitive gene and leaf length in aLolium perenneL. synthetic variety

Haplotype no.	Haplotype	Inferred no. in sample
1	CCAACGGAGGGGGCGCGCAG	1
2	CCACTGAAGCCGGCGCGCAG	66
3	CCACTGAAGCCGGCGGGCAG	1
4	CCACCGAGCGCCCCGCGCAG	1
5	CCACCGGAGGGGGCGCGCAG	3
6	CCGATGGGGCCGCCGCGCAG	1
7	CCGACGGAGGGGCCGCGCAG	1
8	CCGACGGGGCCGGCGCGCAG	3
9	CCGACGGGGCCGGCGCCCAG	57
10	CCGACGGGGCCGCCGCGCAG	17
11	CCGACGGGGCCGCAGCGCAG	3
12	CCGACGGGGCCCCCGCGCAG	1
13	CCGACGGGGGCCGCGCCCAG	1
14	CCGACGGGGGCCGCGGGCAG	2
15	CCGACCAGGCCGGCGCGCAG	14
16	CCGACCGGGCCCCCCCGCAG	1
17	CCGCTGAAGCCCGCGCGCAG	1
18	CCGCTGAACGCCGCGCGCAG	3
19	CCGCTGGAGCCCGCGCGCAG	1
20	CCGCTGGGGCCGGCGCGCAG	1
21	CCGCCGAAGGCCCCGCGCAG	3
22	CCGCCGAAGGCCCCCCGGGT	8
23	CCGCCGAAGGCCCACCGCAG	1
24	CCGCCGAAGGCCCACGGCAG	56
25	CCGCCGAAGGCCCACGGCGG	15
26	CCGCCGAGCGCGCCGCGCAG	1
27	CCGCCGAGCGCCCCGCGCAG	50
28	CCGCCGGAGGCCCCGCGCAG	2
29	CCGCCGGAGGGGGCGCGCAG	1
30	CCGCCGGAGGGGCCGCGCAG	18
31	CCGCCGGAGGGGCCCCGCAG	5
32	CCGCCGGAGGGCCCGCGCAG	1
33	CCGCCGGACGCCCCCGGCAG	3
34	CCGCCGGGGGCCCCGCGCAG	3
35	CCGCCGGGGGCCCCGGGCAG	1
36	CCGCCCGGGCCCCCCCGCAG	3
37	CCGCCCGGGGCCCCGCGCAG	26
38	CGGCCCGAGGCGCCCGGCAG	1
39	ACACTGAAGCCGGCGCGCAG	3

The nine most abundant haplotypes are indicated in bold. In these haplotypes, SNP069 is underlined

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