Solyc01g087690.1 |
SIGD |
AT5G13730 |
-1.06 |
RNA polymerase sigma factor sigD, chloroplastic |
Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase; Regulates transcription of the ndhF gene which codes for a subunit of the plastid NDH [NAD(P)H dehydrogenase] complex |
减少响应光刺激;Decreased transcription; Decreased regulation of RNA biosynthesis |
Lerbs-Mache, Silva. "Function of plastid sigma factors in higher plants: regulation of gene expression or just preservation of constitutive transcription?." Plant molecular biology 76.3-5 (2011): 235-249. |
Solyc06g073260.2 |
CSP41B |
AT1G09340 |
-0.81 |
chloroplast stem-loop binding protein of 41 kDa b, chloroplastic |
Associates with pre-ribosomal particles in chloroplasts and participates in chloroplast ribosomal RNA metabolism; Required for chloroplast integrity and embryo development; Regulates the circadian system; Regulates heteroglycans and monosaccharide mobilization |
Impaired chloroplast organization; Impaired circadian rhythm; Decreased defense response to bacteria and wounding; Decreased galactose catabolism; Decreased monosaccharide metabolism; Decreased transcription and translation; Decreased response to cold and drought; Decreased rRNA processing |
Raab, Sabine, et al. "ABA-responsive RNA-binding proteins are involved in chloroplast and stromule function in Arabidopsis seedlings." Planta 224.4 (2006): 900-914. |
Solyc03g097320.2 |
SIGA |
AT1G64860 |
-0.72 |
RNA polymerase sigma factor sigA |
至关重要的蛋白质,调节psaA基因表达ion; Modulates photosystem stoichiometry; Maintains a harmonious electron flow and photosynthetic efficiency |
减少响应光刺激;减少cellular response to redox state; Decreased DNA-templated transcription; Impaired photosystem stoichiometry adjustment |
Hakimi, Mohamed-Ali, et al. "Evolutionary conservation of C-terminal domains of primary sigma70-type transcription factors between plants and bacteria." Journal of Biological Chemistry 275.13 (2000): 9215-9221. |
Solyc05g055350.2 |
TRZ2 |
AT2G04530 |
-0.48 |
tRNase Z TRZ2, chloroplastic |
Zinc phosphodiesterase which displays tRNA 3'-processing endonuclease activity; Involved in tRNA maturation by removing a 3'-trailer from precursor tRNA |
Decreased tRNA 3'-end processing |
Schiffer, Steffen, Sylvia Rösch, and Anita Marchfelder. "Assigning a function to a conserved group of proteins: the tRNA 3′-processing enzymes." The EMBO journal 21.11 (2002): 2769-2777. |
Solyc11g066920.1 |
PCMP-H28 |
AT4G21065 |
-0.44 |
pentatricopeptide repeat-containing protein At4g21065 |
Involved in RNA modification |
Decreased RNA modification |
Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804. |
Solyc01g111020.2 |
MRL1 |
AT4G34830 |
-0.29 |
pentatricopeptide repeat-containing protein MRL1, chloroplastic |
Regulator of the large subunit of RuBisCO; Involved in the processing and stabilization of the processed transcript |
Decreased mRNA stabilization |
Johnson, Xenie, et al. "MRL1, a conserved pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis." The Plant Cell 22.1 (2010): 234-248. |
Solyc03g034200.2 |
RCF3 |
AT5G53060 |
-0.26 |
RNA-binding KH domain-containing protein RCF3 |
Negative regulator of osmotic stress-induced gene expression; Regulates thermotolerance responses under heat stress; Forms a complex with CPL1 that modulates co-transcriptional processes; Represses stress-inducible gene expression; Involved in primary miRNA processing and pre-miRNA biogenesis; Involved in JA-mediated fungal defense |
Increased heat acclimation; Increased jasmonic acid-mediated signaling; Increased mRNA processing; Increased miRNA processing; Increased regulation of defense response to fungus; Increased regulation of gene expression; Increased response to osmotic stress; Increased RNA splicing |
Xiong, Liming, et al. "HOS5–a negative regulator of osmotic stress-induced gene expression in Arabidopsis thaliana." The Plant Journal 19.5 (1999): 569-578. |
Solyc01g099300.1 |
MORC6 |
AT1G19100 |
0.25 |
protein MICRORCHIDIA 6 |
Involved in RNA-directed DNA methylation during gene silencing; Regulates chromatin architecture/condensation to maintain gene silencing; Positive regulator of defense against oomycetes |
Increased chromatin silencing; Increased fungal defense response; Increased DNA repair; Increased RNA-directed DNA methylation |
Lorković, Zdravko J., et al. "Involvement of a GHKL ATPase in RNA-directed DNA methylation in Arabidopsis thaliana." Current Biology 22.10 (2012): 933-938. |
Solyc12g005330.1 |
RPL8A |
AT2G18020 |
0.25 |
60S ribosomal protein L8-1 |
Involved cytoplasmic translation |
Increased cytoplasmic translation |
Gordon, Sean P., et al. "Pattern formation during de novo assembly of the Arabidopsis shoot meristem." Development 134.19 (2007): 3539-3548. |
Solyc05g050200.1 |
ERF1A |
AT4G17500 |
0.25 |
eukaryotic translation initiation factor 1A |
Required for maximal rate of protein biosynthesis; Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits |
Increased formation of translation preinitiation complex; Increased translational fidelity |
Li, Jigang, et al. "A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice." Journal of experimental botany 57.6 (2006): 1263-1273. |
Solyc09g075640.1 |
FRS11 |
AT1G10240 |
0.25 |
FAR1-RELATED SEQUENCE 11 |
Transcription activator involved in regulating light control of development |
增加了边条tion of transcription |
Joly-Lopez, Zoé, et al. "Abiotic stress phenotypes are associated with conserved genes derived from transposable elements." Frontiers in Plant Science 8 (2017): 2027. |
Solyc04g056280.2 |
CDKC-1 |
AT5G10270 |
0.26 |
cyclin dependent kinase C-1 |
Postranscriptional modifier; Involved in protein phosphorylation; Involved in leaf growth and development; Involved in defense reponse to virus |
Increased leaf development; Increased phosphorylation of RNA polymerase II C-terminal domain; Increased defense response to virus |
Pischke, Melissa S., et al. "A transcriptome-based characterization of habituation in plant tissue culture." Plant Physiology 140.4 (2006): 1255-1278. |
Solyc03g123640.2 |
APUM23 |
AT1G72320 |
0.26 |
pumilio homolog 23 |
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs |
增加了边条tion of translation |
Francischini、卡洛斯·W。和罗纳尔多b Quaggio。”Molecular characterization of Arabidopsis thaliana PUF proteins–binding specificity and target candidates." The FEBS journal 276.19 (2009): 5456-5470. |
Solyc05g048850.2 |
RH8 |
AT4G00660 |
0.27 |
DEAD-box ATP-dependent RNA helicase 8 |
ATP-dependent RNA helicase involved in mRNA turnover and mRNA decapping |
Increased cytoplasmic mRNA processing body assembly and mRNA transport; Increased regulation of translation; Increased stress granule assembly; Increased viral process |
Baek, Woonhee, et al. "A DEAD-box RNA helicase, RH8, is critical for regulation of ABA signalling and the drought stress response via inhibition of PP2CA activity." Plant, cell & environment 41.7 (2018): 1593-1604. |
Solyc05g051790.2 |
NRPB5A |
AT3G22320 |
0.27 |
DNA-directed RNA polymerases II and IV subunit 5A |
Catalyzes the transcription of DNA into RNA; Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs |
Increased transcription by RNA polymerase I & II & II |
Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203. |
Solyc11g005600.1 |
EIF2B |
AT5G20920 |
0.28 |
eukaryotic translation initiation factor 2 subunit beta |
Functions in the early steps of protein synthesis; Binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S pre-initiation complex |
Increased formation of cytoplasmic translation initiation complex; Increased formation of translation preinitiation complex |
Ascencio-Ibáñez, José Trinidad, et al. "Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection." Plant physiology 148.1 (2008): 436-454. |
Solyc06g008970.2 |
XPD |
AT1G03190 |
0.28 |
general transcription and DNA repair factor IIH helicase subunit XPD |
Component of the general transcription and DNA repair factor IIH core comple; Plays an essential role in transcription initiation; Essential during plant growth; Negatively regulates a response to UV damage and heat stress |
Increased DNA repair; Increased mitotic recombination; Increased transcription; Increased protein phosphorylation; Increased regulation of mitotic recombination; Increased response to heat, oxidative, and UV stress; Increased transcription by RNA polymerase II |
Liu, Zongrang, et al. "Arabidopsis UVH6, a homolog of human XPD and yeast RAD3 DNA repair genes, functions in DNA repair and is essential for plant growth." Plant physiology 132.3 (2003): 1405-1414. |
Solyc01g096290.2 |
RPL40A |
AT2G36170 |
0.28 |
ubiquitin-60S ribosomal protein L40 |
Involved in protein degradation via the proteasome; Linear polymer chains formed via attachment by the initiator Met-lead during cellular signaling |
Increased modification-dependent protein catabolism; Increased protein ubiquitination; Increased translation; Increased defense response to bacteria |
Ditt, Renata F., et al. "The Arabidopsis thaliana transcriptome in response to Agrobacteria tumefaciens." Molecular plant-microbe interactions 19.6 (2006): 665-681. |
Solyc12g008450.1 |
N/a |
AT2G40570 |
0.29 |
tRNA A64-2'-O-ribosylphosphate transferase |
Involved in charged-tRNA amino acid modification |
Increased charged-tRNA amino acid modification |
N/a |
Solyc04g082560.2 |
ITSN2 |
N/a |
0.29 |
intersectin-2 |
Adapter protein that provides indirect link between the endocytic membrane traffic and the actin assembly machinery; Regulates formation of clathrin-coated vesicles; Involved in endocytosis of integrin beta-1 |
Increased endocytosis; Increased dendrite extension; Increased regulation of Rho protein signal transduction; Increased viral process |
Mettlen, Marcel, et al. "Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits." Molecular biology of the cell 20.14 (2009): 3251-3260. |
Solyc08g082880.2 |
cox1101 |
N/a |
0.29 |
rsm22-cox11 tandem protein 2, mitochondrial |
Involved in mitochondrion-encoded protein synthesis; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I |
Increased mitochondrial respiratory chain complex IV assembly; Increased mitochondrial translation |
Khalimonchuk, Oleh, et al. "Sequential processing of a mitochondrial tandem protein: insights into protein import in Schizosaccharomyces pombe." Eukaryotic cell 5.7 (2006): 997-1006. |
Solyc06g062350.2 |
RIN1 |
AT5G22330 |
0.29 |
ruvB-like protein 1 |
Core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication, and DNA repair; Component of the NuA4 histone acetyltransferase complex involved in transcriptional activation of select genes |
Increased box C/D snoRNP assembly; Increased cell differentiation; Increased chromatin remodeling; Increased flower development; Increased meristem development; Increased regulation of defense response to fungus; Increased regulation of transcription by RNA polymerase II |
Heyndrickx, Ken S., and Klaas Vandepoele. "Systematic identification of functional plant modules through the integration of complementary data sources." Plant physiology 159.3 (2012): 884-901. |
Solyc11g005130.1 |
UBN1 |
AT1G21610 |
0.30 |
ubinuclein-1 |
Required for replication-independent chromatin assembly |
Increased nucleosome organization; Increased regulation of gene silencing; Increased response to salt stress |
N/a |
Solyc02g077320.2 |
SNI1 |
AT4G18470 |
0.32 |
SNI1 protein |
Involved in DNA double-strand break repair; Negative regulator of hypersensitive response and systemic acquired resistance; Functions synergistically with NTL9/CBNAC as negative regulator of pathogen-induced PR1 expression; Suppresses defense response in the absence of pathogen challenge and is removed in response to induction |
Increased response to DNA damage; Increased defense response to nematode; Increased histone H3 acetylation; Decreased defense response to pathogens; Decreased histone H3-K4 methylation; Decreased systemic acquired resistance; Increased regulation of transcription; Decreased hypersensitive response |
Li, Xin, et al. "Identification and cloning of a negative regulator of systemic acquired resistance, SNI1, through a screen for suppressors of npr1-1." Cell 98.3 (1999): 329-339. |
Solyc09g061340.1 |
PCMP-E76 |
AT2G13600 |
0.33 |
pentatricopeptide repeat-containing protein At2g13600 |
Involved in mitochondrial mRNA modification during sugar metabolism |
Increased mitochondrial mRNA modification; Increased RNA modification; Increased sugar-mediated signaling pathway; Increased sugar metabolism |
Zhu, Qiang, et al. "SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism." The Plant Journal 71.5 (2012): 836-849. |
Solyc08g076100.2 |
BZIP16 |
AT2G35530 |
0.33 |
bZIP transcription factor 16 |
Transcriptional activator; G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control |
Increased transcription; Increased intercellular signaling; increased photosynthesis; Increased plant growth |
Shen, Huaishun, Kaiming Cao, and Xiping Wang. "AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana." BMB reports 41.2 (2008): 132-138. |
Solyc10g074690.1 |
PABN1 |
AT5G51120 |
0.33 |
polyadenylate-binding protein 1 |
Involved in the 3'-end formation of mRNA precursors |
Increased mRNA processing |
Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804. |
Solyc11g010950.1 |
ELP4 |
AT3G11220 |
0.33 |
elongator complex protein 4 |
Component of the RNA polymerase II elongator complex; Promotes organs development by modulating cell division rate; Regulates mechanisms producing carbon or importing sucrose; Involved in the repression of the abscisic acid signaling during seed germination; Required for auxin distribution or signaling; Prevents anthocyanins accumulation |
Increased response to sucrose; Decreased anthocyanin metabolism; Increased cellular turnover; Increased auxin-mediated signaling; Increased regulation of carbon utilization; Increased regulation of leaf development; Increased response to oxidative stress; Increased tRNA wobble uridine modification |
Nelissen, Hilde, et al. "The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth." Proceedings of the National Academy of Sciences 102.21 (2005): 7754-7759. |
Solyc05g007740.1 |
PCMP-H25 |
AT2G34370 |
0.33 |
pentatricopeptide repeat-containing protein At2g34370, mitochondrial |
Involved in RNA modification |
Increased RNA modification |
Guillaumot, Damien, et al. "Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria." Proceedings of the National Academy of Sciences 114.33 (2017): 8877-8882. |
Solyc08g007270.2 |
HAT4 |
AT4G16780 |
0.34 |
homeobox-leucine zipper protein HAT4 |
Negative regulator of cell elongation and proliferation; Mediator of the red/far-red light effects on leaf cell expansion under shade; Negatively regulates its own expression |
Increased lateral root formation; Decreased regulation of transcription; Increased red light phototransduction; Increased response to auxin and cytokinin; Increased root development; Increased secondary thickening; Increased shade avoidance; Increased shoot system morphogenesis |
Schena, Mark, Alan M. Lloyd, and Ronald W. Davis. "The HAT4 gene of Arabidopsis encodes a developmental regulator." Genes & development 7.3 (1993): 367-379. |
Solyc03g007100.2 |
CPSF160 |
AT5G51660 |
0.34 |
cleavage and polyadenylation specificity factor subunit 1 |
Play sa key role in pre-mRNA 3'-end formation |
Increased mRNA polyadenylation |
Herr, Alan J., et al. "Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis." Proceedings of the National Academy of Sciences 103.41 (2006): 14994-15001. |
Solyc03g098420.2 |
PCMP-H37 |
AT2G01510 |
0.35 |
pentatricopeptide repeat-containing protein At2g01510 |
Involved in RNA modification |
Increased RNA modification |
Cheng, Chia-Yi, et al. "Araport11: a complete reannotation of the Arabidopsis thaliana reference genome." The Plant Journal 89.4 (2017): 789-804. |
Solyc04g074910.2 |
RPS21B |
AT3G53890 |
0.36 |
40S ribosomal protein S21-1 |
Structural constituent of the ribosome |
Increased chloroplast organization; Increased endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); Increased translation |
Wang, Ruijuan, et al. "Balance between cytosolic and chloroplast translation affects leaf variegation." Plant physiology 176.1 (2018): 804-818. |
Solyc05g005780.2 |
N/a |
AT1G60070 |
0.37 |
AP-1 complex subunit gamma-2 |
Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting at the trans-Golgi network and early endosomes |
Increased intracellular protein transport; Increased vesicle-mediated transport |
Feng, Chong, et al. "Arabidopsis adaptor protein 1G is critical for pollen development." Journal of integrative plant biology 59.9 (2017): 594-599. |
Solyc06g076340.2 |
APUM2 |
AT2G29190 |
0.37 |
pumilio homolog 2 |
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs |
增加了边条tion of translation |
Francischini、卡洛斯·W。和罗纳尔多b Quaggio。”Molecular characterization of Arabidopsis thaliana PUF proteins–binding specificity and target candidates." The FEBS journal 276.19 (2009): 5456-5470. |
Solyc02g078260.1 |
NRPB2 |
AT4G21710 |
0.37 |
DNA-directed RNA polymerase II subunit 2 |
Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Contributes to the polymerase catalytic activity; Essential for the completion of mitosis in females |
Increased production of miRNAs; Increased transcription by RNA polymerase II |
Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203. |
Solyc01g096390.2 |
NRPE1 |
AT2G40030 |
0.37 |
DNA-directed RNA polymerase V subunit 1 |
DNA-dependent RNA polymerase; Catalytic component of RNA polymerase V involved in RNA-directed DNA methylation-dependent silencing of endogenous repeated sequences; Essential component of siRNA production |
Increased response to fungus; Increased DNA methylation; Increased posttranscriptional gene silencing; Increased transcription by RNA polymerase III |
Pontier, Dominique, et al. "Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis." Genes & development 19.17 (2005): 2030-2040. |
Solyc04g005690.2 |
N/a |
AT1G14650 |
0.38 |
probable splicing factor 3A subunit 1 |
Involved in mRNA splicing |
Increased transcription by mRNA splicing |
Dou, Kun, et al. "The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs." Nucleic acids research 41.18 (2013): 8489-8502. |
Solyc07g049480.2 |
CPSF73-I |
AT1G61010 |
0.39 |
cleavage and polyadenylation specificity factor subunit 3-I |
Play sa key role in pre-mRNA 3'-end formation |
Increased mRNA 3'-end processing by stem-loop binding and cleavage; Increased mRNA polyadenylation; Increased snRNA processing |
Herr, Alan J., et al. "Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis." Proceedings of the National Academy of Sciences 103.41 (2006): 14994-15001. |
Solyc05g047520.2 |
HEN2 |
AT2G06990 |
0.40 |
DExH-box ATP-dependent RNA helicase DExH10 |
Involved in the degradation of a large number of non-coding nuclear exosome substrates; Involved in the maintenance of homeotic B and C gene expression in the reproductive whorl; Regulates floral organ spacing and identity |
Increased maturation of 5.8S rRNA; Increased mRNA processing; Decreased posttranscriptional gene silencing; RNA catabolic process; Increased RNA metabolism; Increased floral organ development |
Western, Tamara L., et al. "HUA ENHANCER2, a putative DExH-box RNA helicase, maintains homeotic B and C gene expression in Arabidopsis." Development 129.7 (2002): 1569-1581. |
Solyc02g021760.2 |
CPSF30 |
AT1G30460 |
0.40 |
30-kDa cleavage and polyadenylation specificity factor 30 |
Component of the cleavage and polyadenylation specificity factor complex that plays a key role in pre-mRNA 3'-end formation and poly(A) addition; Involved in post-transcriptional control of oxidative stress responses; Regulates salicylic acid production |
Increased mRNA polyadenylation; Increased hypersensitive response; Increased salicylic acid mediated signaling pathway; Increased response to oxidative stress; Increased RNA processing |
Delaney, Kimberly J., et al. "Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit." Plant physiology 140.4 (2006): 1507-1521. |
Solyc12g049410.1 |
NUP107 |
AT3G14120 |
0.40 |
nuclear pore complex protein NUP107 |
Involved in mRNA export from the nucleus by posttranscriptional tethering of RNA polymerase II; Involved in protein import into the nucleus |
Increased mRNA transport from nucleus; Increased protein transort into nucleus |
Parry, Geraint, et al. "The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins with an important role in hormone signaling and development." The Plant Cell 18.7 (2006): 1590-1603. |
Solyc03g025940.1 |
N/a |
AT3G48880 |
0.42 |
F-box/LRR-repeat protein |
Involved in endogenous messenger response to Gram-negative bacteria |
增加RNA signaling; Increased defense response to Gram-negative bacteria |
Thieme, Christoph J., et al. "Endogenous Arabidopsis messenger RNAs transported to distant tissues." Nature Plants 1.4 (2015): 15025. |
Solyc09g082520.2 |
RPS3AA |
AT3G04840 |
0.47 |
40S ribosomal protein S3a-1 |
Structural constituent of the ribosome |
Increased translation |
Chen, I-Peng, et al. "The transcriptional response of Arabidopsis to genotoxic stress–a high-density colony array study (HDCA)." The Plant Journal 35.6 (2003): 771-786. |
Solyc04g040170.1 |
NRPE5A |
AT3G57080 |
0.49 |
DNA-directed RNA polymerase V subunit 5A |
Catalyzes the transcription of DNA into RNA; Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs |
Increased transcription by RNA polymerase I & II & III |
Ream, Thomas S., et al. "Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II." Molecular cell 33.2 (2009): 192-203. |
Solyc05g032770.2 |
AL4 |
AT5G26210 |
0.53 |
PHD finger protein ALFIN-LIKE 4 |
Histone-binding component that specifically recognizes H3 tails trimethylated on Lys-4 |
增加染色质组织;增加了边条tion of transcription |
Lee, Woo Yong, et al. "Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers." The Plant Journal 58.3 (2009): 511-524. |
Solyc09g065850.2 |
AUX22 |
AT1G15580 |
0.64 |
auxin-induced protein AUX22 |
Repressors of early auxin response genes at low auxin concentrations |
Increased auxin-activated signaling; Increased regulation of transcription |
Taniguchi, Masatoshi, et al. "Identification of gravitropic response indicator genes in Arabidopsis inflorescence stems." Plant signaling & behavior 9.9 (2014): e29570. |
Solyc05g012210.2 |
AFP3 |
AT3G29575 |
0.76 |
ninja-family protein AFP3 |
Acts as a negative regulator of abscisic acid response and stress responses |
Decreased transcription; Increased signal transduction |
de Torres-Zabala, Marta, et al. "Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid signalling pathway to cause disease." The EMBO journal 26.5 (2007): 1434-1443. |
Solyc08g007530.2 |
AHL1 |
AT4G12080 |
0.90 |
AT-hook motif nuclear-localized protein 1 |
Specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions; Functions in the positioning of chromatin fibers within the nucleus |
Increased transcription; Increased cellular turnover |
Fujimoto, Satoru, et al. "Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces." Plant molecular biology 56.2 (2004): 225-239. |
Solyc01g096320.2 |
ATHB-12 |
AT3G61890 |
1.31 |
homeobox-leucine zipper protein ATHB-12 |
Transcription activator that acts as growth regulators in response to drought |
Increased development; Increased transcription; Increased response to abscisic acid; Increased response to virus; Increased response to drought and osmotic stress |
Olsson, Anna, Peter Engström, and Eva Söderman. "The homeobox genes ATHB12 and ATHB7encode potential regulators of growth in response to water deficit in Arabidopsis." Plant molecular biology 55.5 (2004): 663-677. |