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Table 2 Positively selected sites in corresponding genes ofChlamydomonassp. ICE-L,Dunaliella salinaandChlorellasp. ArM0029B

From:The Antarctic sea ice algaChlamydomonassp. ICE-L provides insights into adaptive patterns of chloroplast evolution

Gene Branch-site model -lnL 2δ(lnL) Q Value ω Values Positively selected sites
atpA Branch (Dunaliella salina)
Null 9513.725 ω0 = 0.026, ω1 = 1, ω2 = 1
Alternative 9503.900 19.650 4.28E-04 ω0 = 0.026, ω1 = 1, ω2 = 49.199 259–0.994, 269–0.951, 373–0.977, 382–0.996, 426–0.969, 429–0.978, 432–0.992, 434–0.998, 450–0.952, 455–0.978
atpB Branch (Chlamydomonassp ICE-L)。
Null 8590.140 ω0 = 0.023, ω1 = 1, ω2 = 1
Alternative 8567.141 45.998 5.43E-10 ω0 = 0.022, ω1 = 1, ω2 = 999 24–1.000, 107–0.978, 109–0.999, 375–0.998,
Branch (Dunaliella salina)
Null 8566.141 ω0 = 0.021, ω1 = 1, ω2 = 1
Alternative 8558.602 15.079 2.37E-03 ω0 = 0.021, ω1 = 1, ω2 = 57.824 112–0.975, 297–0.970, 305–0.970, 331–0.966, 371–0.977
atpE Branch (Chlorellasp. ArM0029B)
Null 2572.548 ω0 = 0.030, ω1 = 1, ω2 = 1
Alternative 2568.079 8.936 4.29E-02 ω0 = 0.030, ω1 = 1, ω2 = 694.685 100–0.987
petA Branch (Chlorellasp. ArM0029B)
Null 5724.705 ω0 = 0.042, ω1 = 1, ω2 = 1
Alternative 5720.106 9.198 4.29E-02 ω0 = 0.042, ω1 = 1, ω2 = 999 216–0.984, 243–0.986
psaB Branch (Chlamydomonassp ICE-L)。
Null 12,670.404 ω0 = 0.015, ω1 = 1, ω2 = 1
Alternative 12,665.032 10.746 1.60E-02 ω0 = 0.016, ω1 = 1, ω2 = 998.999 220–0.972, 356–0.985, 646–0.990
psbC Branch (Dunaliella salina)
Null 7158.342 ω0 = 0.019, ω1 = 1, ω2 = 1
Alternative 7151.779 13.126 4.47E-03 ω0 = 0.019, ω1 = 1, ω2 = 999 207–0.958, 355–0.988, 360–0.980, 410–0.992
rbcL Branch (Chlamydomonassp ICE-L)。
Null 6852.947 ω0 = 0.016, ω1 = 1, ω2 = 1
Alternative 6843.536 18.822 3.31E-04 ω0 = 0.017, ω1 = 1, ω2 = 365.261 372–0.969, 450–0.999, 457–0.994
  1. The number for amino acid residues identified by Bayes empirical bayes (BEB) analyses corresponds to their alignment positions. Number behind hyphen is the posterior probability (PP) under BEB analysis
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BMC Plant Biology

ISSN: 1471 - 2229

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