Table 1 Identification of putative F3’H genes in cereal plants. The F3’H class was classified based on the phylogeny analyses. The gene duplication pattern was determined using the MCScanX tool. NA stands for “not applicable”

From:Evolutionary dynamic analyses on monocot flavonoid 3′-hydroxylase gene family reveal evidence of plant-environment interaction

Species		Chr	F3’H gene ID	F3’H class	Duplication pattern	Start position	End position
Triticeae	H. vulgare	1H	HORVU1Hr1G094880	Class I	Dispersed duplication	556,691,949	556,693,904
		6H	HORVU6Hr1G002400	Class II	Dispersed duplication	6,328,532	6,330,799
		7H	HORVU7Hr1G095900.47	Class II	Dispersed duplication	585,061,615	585,071,468
	A. tauschiii	Aet1	AET1Gv21041800	Class I	Dispersed duplication	499,122,364	499,126,756
		Aet6	AET6Gv20027200	Class II	Dispersed duplication	5,657,246	5,659,238
		Aet7	AET7Gv20999800	Class II	Dispersed duplication	523,485,446	523,487,617
	T. turgidum	Tt1A	TRIDC1AG064860	Class I	NA	590,437,663	590,440,408
		Tt1B	TRIDC1BG074020	Class I		685,939,174	685,944,027
		Tt2B	TRIDC2BG088640	Class I		792,785,227	792,787,184
		Tt6A	TRIDC6AG001340	Class II		4,624,395	4,644,086
		Tt6B	TRIDC6BG002010	Class II		11,399,578	11,402,254
		Tt7A	TRIDC7AG057400	Class II		599,327,799	599,328,465
		Tt7B	TRIDC7BG049820	Class II		562,791,603	562,792,604
	T. aestivum	Ta1A	TraesCS1A01G442300.1	Class I	NA	590,995,642	590,997,413
		Ta1B	TraesCS1B01G476400.1	Class I		685,231,562	685,233,491
		Ta1D	TraesCS1D01G450100.1	Class I		492,534,241	492,538,011
		Ta2B	TraesCS2B01G613200.1	Class I		792,677,476	792,679,409
		Ta6A	TraesCS6A01G012600.1	Class II		5,861,572	5,863,417
		Ta6B	TraesCS6B01G018800.1	Class I		11,574,703	11,578,097
		Ta6D	TraesCS6D01G015200.1	Class II		6,319,419	6,321,226
		Ta7A	TraesCS7A01G411700.1	Class II		602,804,667	602,806,415
		Ta7D	TraesCS7D01G404900.1	Class II		522,502,518	522,504,208
	S. cereale	Sc1	Sc1Loc01465431	Class I	NA	Lo7_v2_contig_2871825
		Sc2	Sc2Loc01684522	Class I		Lo7_v2_contig_326626
		Sc7	Sc7Loc01952123	Class II		Lo7_v2_contig_61986
	T. urartu	Tu1	TuG1812G0100004862	Class I	Dispersed duplication	581,402,997	581,404,997
	T. urartu	Tu7	TuG1812G0700004460	Class II	Dispersed duplication	590,301,744	590,303,739
	B. distachyon	Bd1	Bradi1g17180	Class I	Dispersed duplication	13,787,434	13,789,806
		Bd1	Bradi1g24840	Class II	Dispersed duplication	20,108,563	20,112,348
		Bd3	Bradi3g04750	Class I	Dispersed duplication	3,260,666	3,262,706
		Bd4	Bradi4g16560	Class II	Dispersed duplication	17,368,956	17,372,786
	O. sativa indica	Os10	LOC_Os10g17260	Class I	Proximal duplication	8,679,309	8,681,284
	O. sativa indica	Os10	LOC_Os10g16974	Class II	Proximal duplication	8,494,247	8,504,329
Panicoideae	Z. mays	Zm4	Zm00008a016611	Class I	WGD/Segmental	131,908,959	131,910,431
		Zm5	Zm00008a022212	Class I	WGD/Segmental	177,289,973	177,292,210
		Zm8	Zm00008a031477	Class II	Dispersed duplication	116,235,840	116,239,418
	S. bicolor	Sb4	Sobic.004G200800	Class I	Tandem duplication	55,221,098	55,224,686
		Sb4	Sobic.004G200833	Class I	Tandem duplication	55,225,513	55,227,179
		Sb4	Sobic.004G200900	Class I	Proximal duplication	55,233,582	55,236,702
		Sb4	Sobic.004G201100	Class I	Proximal duplication	55,261,682	55,264,545
		Sb9	Sobic.009G162500	Class II	Dispersed duplication	51,943,204	51,948,939
	S. italica	Si9	Seita.9G244600	Class II	Dispersed duplication	19,091,837	19,094,929
	S. italica	Si9	Seita.9G242900	Class I	Dispersed duplication	18990913年	18,992,801
	P. hallii	Ph8	Pahal.H01052	Class II	Dispersed duplication	31,682,928	31,687,178
	P. hallii	Ph9	Pahal.I03232	Class I	Dispersed duplication	16,748,267	16,750,212

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Table 1 Identification of putative F3’H genes in cereal plants. The F3’H class was classified based on the phylogeny analyses. The gene duplication pattern was determined using the MCScanX tool. NA stands for “not applicable”

BMC Plant Biology

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