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Table 2 Top QTN associated with plant height identified by the sp-GWAS method

From:Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs

Chr Position P-value Maize Gene Annotation Nearby candidate Gene
1 136,947,083 7.17E-10
1 160,450,782 8.35E-06 GRMZM2G081151:
Camelliol C synthase
1 253,355,509 3.15E-10 GRMZM2G066234:
Protein OSB2 chloroplastic
GRMZM2G366373:
Auxin-responsive protein IAA4; Ortholog of indole acetic acid 3/short hypocotyl 2 inA. thaliana
1 258,740,929 1.53E-08
2a 31,215,734 7.03E-07 GRMZM2G082191:
Probable leucine-rich repeat receptor-like protein kinase
GRMZM2G082191 (SNP in candidate):
receptor like protein kinase; Brassinosteroid insensitive function in rice
2 236,038,975 1.27E-06
3a 9,953,933 1.01E-07 GRMZM2G100260:
D-Tyr-tRNA (Tyr) deacylase family protein
GRMZM2G004696:
Aux/IAA transcription factor 8
3 179,174,157 9.31平台以及 GRMZM2G400390:
Laccase-7
GRMZM2G449033: nana plant1
3 198,776,203 6.46E-08
3 208,434,550 3.43E-06
4 36,939,527 6.59E-09 GRMZM2G508530:
unknown function
GRMZM2G170232:
tcp- transcription factor 39; Ortholog of tcp transcription factor 1 inA. thaliana
4 74075452年 9.21E-07
4 184,329,977 5.72E-06
4 184,329,983 5.72E-06
4 184,329,984 5.28E-06
4 184,329,985 4.29E-06
4a 199,976,446 1.38E-08 GRMZM2G393337:
3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
GRMZM2G393337 (SNP in candidate);
Ortholog of Hydroxy Methylglutaryl CoA Reductase 1 (hmg1) inA. thaliana
5 152,583,112 6.12E-06 GRMZM2G161299: mcf1 - mitochondrial carrier family protein1
5 161,902,893 2.37E-07 GRMZM2G123587:
Protein ROS1
7 34,193,779 1.15E-07 GRMZM2G092129:
Calcium-dependent lipid-binding (CaLB domain) family protein
7 111,286,404 1.91E-07
7 125,687,609 1.65E-06
8 166,967,198 1.15E-06
9 32,107,065 8.33E-06
9 59,694,089 1.67E-09
  1. aSNPs/regions that overlap between sp-GWAS and BSA