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Table 3 The genome areas identified to be rich in SNDs among the twelve acquired chloroplast genomes. Genome areas that have more than 10 SNDs per 500 bp are considered to be rich in SNDs

From:Twelve complete chloroplast genomes of wild peanuts: great genetic resources and a better understanding ofArachisphylogeny

Genome position Count Region Genomic context Sequence content
66,000–66,500 47 LSC psbE~petL 垫片
44,500–45,000 34 LSC rpoC2 coding
112,000–112,500 32 IRA; SSC trnN-GUU~ndhF;ndhF 垫片; coding
115,000–115,500 26 SSC rpl32;rpl32~trnL-UAG coding; spacer
15,000–15,500 23 LSC trnL-UAA~trnL-UGU;trnT-UGU;trnT-UGU~rps4 垫片; coding; spacer
119,500–120,000 22 SSC psaC~ndhE; ndhE~ndhG 垫片; spacer
115,500–116,000 21 SSC rpl32~trnL-UAG;trnL-UAG;trnL-UAG~ccsA 垫片; coding; spacer
53,000–53,500 20 LSC trnR-UCU;trnR-UCU~trnS-GCU coding; spacer
56,000–56,500 20 LSC psbK;psbK~trnQ-UUG coding; spacer
56,500–57,000 20 LSC psbK~trnQ-UUG;trnQ-UUG;trnQ-UUG~accD 垫片; coding; spacer
81,000–81,500 20 LSC rps11~rpl36;rpl36;rpl36~rps8 垫片; coding; spacer
114,500–115,000 20 SSC ndhF~rpl32;rpl32 垫片; coding
86,000–86,500 18 LSC;IRA rps19;rps19~rpl2;rpl2 coding; spacer; coding
10,000–10,500 17 LSC trnV-UAC;trnV-UAC~ndhC coding; spacer
14,500–15,000 17 LSC trnL-UAA~trnL-UGU 垫片
57,000–57,500 17 LSC trnQ-UUG~accD 垫片
130,500–130,894 17 SSC ycf1 coding
130,000–130,500 16 SSC ycf2 coding
1500–2000 14 LSC psbA~trnK-UUU;trnK-UUU 垫片; coding
25,000–25,500 14 LSC trnG-UCC~psbZ 垫片
48,000–48,500 14 LSC atpI~atpH 垫片
54,500–55,000 14 LSC trnR-UCU~trnS-GCU 垫片
29,000–29,500 13 LSC psbD;psbD~trnT-GGU coding; spacer
29,000–29,500 13 LSC psbD;psbD~trnT-GGU coding; spacer
122,500–123,000 13 SSC ndhA coding
18,500–19,000 12 LSC ycf3;ycf3~psaA coding; spacer
48,500–49,000 12 LSC atpI~atpH 垫片
125,500–126,000 12 SSC rps15;rps15~ycf1 coding; spacer
0–500 11 LSC trnH-GUG;trnH-GUG~psbA;psbA coding; spacer; coding
13,000–13,500 11 LSC ndhJ~trnF-GAA;trnF-GAA; trnF-GAA~trnL-UAA 垫片; coding; spacer
4000–4500 10 LSC matK~rbcL 垫片
4500–5000 10 LSC matK~rbcL 垫片
31,500–32,000 10 LSC trnE-UUC;trnE-UUC~trnY-GUA;trnY-GUA;trnY-GUA~trnD-GUC coding; spacer; coding; spacer
33,500–34,000 10 LSC psbM~petN;petN;petN~trnC-GCA 垫片; coding; spacer
49500 - 50000 10 LSC atpH;atpH~atpF;atpF coding; spacer; coding
58,000–58,500 10 LSC trnU-UUG~accD;accD 垫片; coding
80,500–81,000 10 LSC rps11;rps11~rpl36 coding; spacer
101,500–102,000 10 IRA rps7~trnV-GAC 垫片
123,000–123,500 10 SSC ndhA coding
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BMC Plant Biology

ISSN: 1471-2229

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