DNA barcodes type |
length (bp) |
Polymorphic sites |
Polymorphic sites (%) |
Identified species (Success rate) |
Standard DNA barcodes |
nrITS |
ITS1 + 5.8S |
449 |
6 |
1.34 |
0 (0%) |
5.8S + ITS2 |
467 |
16 |
3.43 |
1 (11%) |
nrITS |
768 |
22 |
2.92 |
1 (11%) |
plastid |
matK |
1527 |
14 |
0.92 |
2 (22%) |
rbcL |
1428 |
8 |
0.56 |
2 (22%) |
trnH-psbA |
386 |
23 |
5.96 |
2 (22%) |
combination |
matK + rbcL |
2955 |
22 |
0.74 |
3 (33%) |
trnH-psbA + matK + rbcL |
3341 |
44 |
1.32 |
3 (33%) |
matK + rbcL +nrITS |
3723 |
44 |
1.18 |
5 (56%) |
trnH-psbA + matK + rbcL + nrITS |
4109 |
66 |
1.61 |
4 (44%) |
Genomic element |
trnE-T |
995 |
21 |
2.11 |
1 (11%) |
trnT-L |
1026 |
36 |
3.51 |
2 (22%) |
potential specific-barcodes |
ndhF |
2244 |
38 |
1.69 |
5 (56%) |
ndhF-rpl32 |
993 |
28 |
2.82 |
4 (44%) |
rpl32-trnL |
632 |
16 |
2.53 |
4 (44%) |
trnC-petN |
900 |
82 |
9.11 |
4 (44%) |
trnS-G |
1233 |
26 |
2.11 |
5 (56%) |
Combination* |
5795 |
200 |
3.45 |
6 (67%) |
Complete plastid genomes (only one IR) |
133,980 |
1151 |
0.86 |
7 (78%) |