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Table 2 Genes involved in phytohormone metabolism and signalling

From:Differential transcription pathways associated with rootstock-induced dwarfing in breadfruit (Artocarpus altilis) scions

Description Pattern of DEGs Gene ID
非盟xin
Indole-3-pyruvate monooxygenase; YUCCA down oases_465475
2-oxoglutarate-dependent dioxygenase DAO up oases_546679, oases_546677, trinity_352891
Indole-3-acetic acid-amido synthetase GH3.6 up oases_585901; rnaspades_20166
非盟xin efflux carrier component 3; PIN3 down oases_96998
Phytochrome-interacting factor 4; PIF4 down oases_383788, oases_383793
非盟xin influx carrier; AUX1 / LAX down trinity_70441, oases_184908
非盟xin response factor; ARF down trinity_295296
Gibberellin
Gibberellin 20 oxidase; GA20ox down oases_103383, oases_103382, oases_532982
Ent-kaurene oxidase; GA3 down oases_118699, oases_118698
DELLA protein up trinity_376415, trinity_376421
Brassinosteroids
Brassinosteroid-6-oxidase 1 down oases_222582, trinity_237646, oases_222575
CYP90A1 down oases_115434
Strigolactones
All-trans/9-cis-β-carotene isomerase; DWARF27 down oases_375815, oases_375817, oases_375816,
rnaspades_110041, oases_375808
Strigolactone esterase; DWARF14 up oases_468066
Strigolactone esterase; DWARF14 down oases_448880, oases_448881
Cytokinin
Adenylate isopentenyltransferase 5; IPT5 up oases_535017, oases_535016; oases_535015
Histidine-containing phosphotransfer protein up oases_162595, oases_162591
Type-B ARABIDOPSIS RESPONSE REGULATOR up oases_337156
Type-A ARABIDOPSIS RESPONSE REGULATOR down oases_455999
WUSCHEL-related homeobox 1; WUS up oases_589420
Abscisic acid
Zeaxanthin epoxidase; ZEP down oases_145318
SNF1-related protein kinase 2; SnRK2 down trinity_216465, oases_147911
ABA responsive element binding factor; ABF down oases_140827
Ethylene
1-aminocyclopropane-1-carboxylate oxidase up oases_571321, oases_522201, rnaspades_28915
Ethylene-responsive transcription factor ERF2 up rnaspades_123541
Jasmonic acid
Jasmonic acid-amino synthetase; JAR1_4_6 up oases_262217, trinity_253178, oases_262230,
oases_262216, oases_262227
Jasmonate ZIM domain protein; JAZ down rnaspades_58714, oases_151042, trinity_148341
Salicylic acid
Isochorismate synthase; PHYLLO up rnaspades_8947, oases_243078
Salicylic acid 3-hydroxylase; DMR6 up oases_327994
Pathogenesis-related protein 1; PR-1 up rnaspades_100763, rnaspades_107927