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Table 3 Identification of SNPs in putative candidate genes for CTS

From:Combining QTL-seq and linkage mapping to fine map a candidate gene inqCTS6for cold tolerance at the seedling stage in rice

通用电气ne ID Position Amino_acida DF-104 base DN-430 base T-pool base S-pool base Δ (SNP-index) G-Value ED Fisher exact test Structure_type Function
Os06g0717400 30484096 L/S(-) G A G A 0.71 55.54 1.02 4.97E-13 exonic hypothetical conserved gene
Os06g0717800 30499155 T/T(-) A G A G 0.47 21.54 0.44 9.03E-06 exonic
exonic		 protein phosphatase 2C
30499218 I/M(-) C T C T 0.58 33.47 0.68 1.73E-08
Os06g0718000 30512105 Q/R(-) C T C T 0.29 8.52 0.17 0.004493 exonic Hypothetical protein
Os06g0719500 30563973 F/Y(+) A T A T 0.60 18.83 0.72 4.71E-05 exonic bZIP transcription factor
  1. a"/" indicates the amino acid before the mutation, the letter after the "/" indicates the amino acid after the mutation, "-" indicates the transcript located on the antisense strand, and "+" indicates the transcript located on the reference genome
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BMC Plant Biology

ISSN: 1471 - 2229

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